Opened 9 years ago
Closed 9 years ago
#26663 closed Bug (needsinfo)
libgeos in django makes a gevent gunicorn worker crash
| Reported by: | Tapan Pandita | Owned by: | nobody |
|---|---|---|---|
| Component: | GIS | Version: | 1.9 |
| Severity: | Normal | Keywords: | libgeos geodjango |
| Cc: | Triage Stage: | Unreviewed | |
| Has patch: | no | Needs documentation: | no |
| Needs tests: | no | Patch needs improvement: | no |
| Easy pickings: | no | UI/UX: | no |
Description (last modified by )
I am running django 1.9.6 on gunicorn 19.5 with the gevent worker (gevent==1.1.1, greenlet==0.4.9). Using geos version: 3.4.2, gdal version: 1.11.1 and proj version: 4.8.0_1. My app is deployed on heroku. For some requests, I have noticed this error: *** Error in '/app/.heroku/python/bin/python': double free or corruption (out): 0x000000000403bc90 ***
This is the command I'm using to start gunicorn: gunicorn api.wsgi:application -b 0.0.0.0:$PORT -c config/gunicorn.py and this is my gunicorn config:
from os import environ workers = environ.get('GUNICORN_NUM_WORKERS', 2) max_requests = environ.get('GUNICORN_MAX_REQUESTS', 0) worker_class = environ.get( 'GUNICORN_WORKER_CLASS', 'gevent ) loglevel = environ.get('GUNICORN_LOG_LEVEL', 'info') preload = False timeout = 20 accesslog = '-' errorlog = '-' access_log_format = ('%({X-Forwarded-For}i)s %(l)s %(u)s %(t)s "%(r)s" %(s)s' ' %(b)s "%(f)s" "%(a)s" %(D)s') def post_fork(server, worker): from psycogreen.gevent import patch_psycopg patch_psycopg() server.log.info('Worker spawned (pid: %s)', worker.pid) def pre_exec(server): server.log.info('Forked child, re-executing.') def when_ready(server): server.log.info('Server is ready. Spawning workers')
I set the MALLOC_CHECK_ environment variable to 3. Here is the backtrace and the memory map that I got. I can't really make much sense of it but it looks like the crash happens when libgeos tries to free memory. I can reproduce it consistently with the gevent worker and everything works fine with the sync worker.
File "/app/.heroku/python/lib/python2.7/site-packages/newrelic-2.64.0.48/newrelic/api/function_trace.py", line 98, in dynamic_wrapper return wrapped(*args, **kwargs) File "/app/.heroku/python/lib/python2.7/site-packages/django/template/base.py", line 197, in _render return self.nodelist.render(context) File "/app/.heroku/python/lib/python2.7/site-packages/django/template/base.py", line 992, in render bit = node.render_annotated(context) File "/app/.heroku/python/lib/python2.7/site-packages/django/template/base.py", line 959, in render_annotated return self.render(context) File "/app/.heroku/python/lib/python2.7/site-packages/django/template/defaulttags.py", line 220, in render nodelist.append(node.render_annotated(context)) File "/app/.heroku/python/lib/python2.7/site-packages/django/template/base.py", line 743, in resolve return obj File "/app/.heroku/python/lib/python2.7/site-packages/django/template/base.py", line 862, in resolve return value File "/app/.heroku/python/lib/python2.7/site-packages/django/template/base.py", line 935, in _resolve_lookup return current File "/app/.heroku/python/lib/python2.7/site-packages/rest_framework/relations.py", line 503, in iter_options cutoff_text=self.html_cutoff_text File "/app/.heroku/python/lib/python2.7/site-packages/rest_framework/relations.py", line 497, in grouped_choices return self.choices File "/app/.heroku/python/lib/python2.7/site-packages/rest_framework/relations.py", line 493, in choices return self.child_relation.choices File "/app/.heroku/python/lib/python2.7/site-packages/django/contrib/gis/geos/geometry.py", line 125, in __del__ capi.destroy_geom(self._ptr) File "/app/.heroku/python/lib/python2.7/site-packages/django/contrib/gis/geos/libgeos.py", line 157, in __call__ return self.func(*args, **kwargs) File "/app/.heroku/python/lib/python2.7/site-packages/django/contrib/gis/geos/prototypes/threadsafe.py", line 56, in __call__ return self.cfunc(self.thread_context.handle.ptr, *args) *** Error in `/app/.heroku/python/bin/python': free(): invalid pointer: 0x000000000346c530 *** ======= Backtrace: ========= /lib/x86_64-linux-gnu/libc.so.6(+0x7338f)[0x7f51ab67f38f] /lib/x86_64-linux-gnu/libc.so.6(+0x81fb6)[0x7f51ab68dfb6] /app/.heroku/vendor/lib/libgeos_c.so.1(GEOSGeom_destroy_r+0x12)[0x7f5193706572] /app/.heroku/python/lib/python2.7/lib-dynload/_ctypes.so(ffi_call_unix64+0x4c)[0x7f51a7bae552] /app/.heroku/python/lib/python2.7/lib-dynload/_ctypes.so(ffi_call+0x1b0)[0x7f51a7bad600] /app/.heroku/python/lib/python2.7/lib-dynload/_ctypes.so(_ctypes_callproc+0x293)[0x7f51a7ba58a3] /app/.heroku/python/lib/python2.7/lib-dynload/_ctypes.so(+0x98b5)[0x7f51a7b9c8b5] /app/.heroku/python/bin/python(PyObject_Call+0x3a)[0x4230ba] /app/.heroku/python/bin/python(PyEval_EvalFrameEx+0x1e81)[0x4b2bd1] /app/.heroku/python/bin/python(PyEval_EvalCodeEx+0x7f8)[0x4ba6e8] /app/.heroku/python/bin/python[0x52e2cf] /app/.heroku/python/bin/python(PyObject_Call+0x3a)[0x4230ba] /app/.heroku/python/bin/python[0x4275b5] /app/.heroku/python/bin/python(PyObject_Call+0x3a)[0x4230ba] /app/.heroku/python/bin/python[0x481555] /app/.heroku/python/bin/python(PyObject_Call+0x3a)[0x4230ba] /app/.heroku/python/bin/python(PyEval_EvalFrameEx+0x1e81)[0x4b2bd1] /app/.heroku/python/bin/python(PyEval_EvalCodeEx+0x7f8)[0x4ba6e8] /app/.heroku/python/bin/python[0x52e200] /app/.heroku/python/bin/python(PyObject_Call+0x3a)[0x4230ba] /app/.heroku/python/bin/python[0x4275b5] /app/.heroku/python/bin/python(PyObject_Call+0x3a)[0x4230ba] /app/.heroku/python/bin/python[0x481555] /app/.heroku/python/bin/python(PyObject_Call+0x3a)[0x4230ba] /app/.heroku/python/bin/python(PyEval_EvalFrameEx+0x17c2)[0x4b2512] /app/.heroku/python/bin/python(PyEval_EvalCodeEx+0x7f8)[0x4ba6e8] /app/.heroku/python/bin/python[0x52e200] /app/.heroku/python/bin/python(PyObject_Call+0x3a)[0x4230ba] /app/.heroku/python/bin/python[0x4275b5] /app/.heroku/python/bin/python(PyObject_Call+0x3a)[0x4230ba] /app/.heroku/python/bin/python(PyEval_CallObjectWithKeywords+0x47)[0x4b0ca7] /app/.heroku/python/bin/python[0x482140] /app/.heroku/python/bin/python[0x47ad56] /app/.heroku/python/bin/python[0x52c892] /app/.heroku/python/bin/python[0x52cacc] /app/.heroku/python/bin/python[0x52cacc] /app/.heroku/python/bin/python[0x52c892] /app/.heroku/python/bin/python(PyEval_EvalFrameEx+0x6cb8)[0x4b7a08] /app/.heroku/python/bin/python(PyEval_EvalCodeEx+0x7f8)[0x4ba6e8] /app/.heroku/python/bin/python[0x52e200] /app/.heroku/python/bin/python(PyObject_Call+0x3a)[0x4230ba] /app/.heroku/python/bin/python[0x4275b5] /app/.heroku/python/bin/python(PyObject_Call+0x3a)[0x4230ba] /app/.heroku/python/bin/python(PyEval_CallObjectWithKeywords+0x47)[0x4b0ca7] /app/.heroku/python/bin/python[0x4ff332] /lib/x86_64-linux-gnu/libpthread.so.0(+0x8182)[0x7f51ac0e6182] /lib/x86_64-linux-gnu/libc.so.6(clone+0x6d)[0x7f51ab70647d] ======= Memory map: ======== 00400000-005a6000 r-xp 00000000 fc:00 14701491 /app/.heroku/python/bin/python2.7 007a5000-007a6000 r--p 001a5000 fc:00 14701491 /app/.heroku/python/bin/python2.7 007a6000-007e2000 rw-p 001a6000 fc:00 14701491 /app/.heroku/python/bin/python2.7 007e2000-007f2000 rw-p 00000000 00:00 0 02497000-02a7c000 rw-p 00000000 00:00 0 [heap] 02a7c000-0413a000 rw-p 00000000 00:00 0 [heap] 7f517d909000-7f517d989000 rw-p 00000000 00:00 0 7f517d989000-7f517da02000 r-xp 00000000 fc:00 15211032 /app/.heroku/python/lib/python2.7/site-packages/numpy/random/mtrand.so 7f517da02000-7f517dc02000 ---p 00079000 fc:00 15211032 /app/.heroku/python/lib/python2.7/site-packages/numpy/random/mtrand.so 7f517dc02000-7f517dc3d000 rw-p 00079000 fc:00 15211032 /app/.heroku/python/lib/python2.7/site-packages/numpy/random/mtrand.so 7f517dc3d000-7f517dc7f000 rw-p 00000000 00:00 0 7f517dc7f000-7f517dc88000 r-xp 00000000 fc:00 15210802 /app/.heroku/python/lib/python2.7/site-packages/numpy/fft/fftpack_lite.so 7f517dc88000-7f517de87000 ---p 00009000 fc:00 15210802 /app/.heroku/python/lib/python2.7/site-packages/numpy/fft/fftpack_lite.so 7f517de87000-7f517de88000 rw-p 00008000 fc:00 15210802 /app/.heroku/python/lib/python2.7/site-packages/numpy/fft/fftpack_lite.so 7f517de88000-7f517dec8000 rw-p 00000000 00:00 0 7f517dec8000-7f517dec9000 r-xp 00000000 fc:00 14821024 /app/.heroku/python/lib/python2.7/lib-dynload/future_builtins.so 7f517dec9000-7f517e0c8000 ---p 00001000 fc:00 14821024 /app/.heroku/python/lib/python2.7/lib-dynload/future_builtins.so 7f517e0c8000-7f517e0c9000 r--p 00000000 fc:00 14821024 /app/.heroku/python/lib/python2.7/lib-dynload/future_builtins.so 7f517e0c9000-7f517e0ca000 rw-p 00001000 fc:00 14821024 /app/.heroku/python/lib/python2.7/lib-dynload/future_builtins.so 7f517e0ca000-7f517e0f3000 r-xp 00000000 fc:00 15210920 /app/.heroku/python/lib/python2.7/site-packages/numpy/linalg/_umath_linalg.so 7f517e0f3000-7f517e2f2000 ---p 00029000 fc:00 15210920 /app/.heroku/python/lib/python2.7/site-packages/numpy/linalg/_umath_linalg.so 7f517e2f2000-7f517e2f4000 rw-p 00028000 fc:00 15210920 /app/.heroku/python/lib/python2.7/site-packages/numpy/linalg/_umath_linalg.so 7f517e2f4000-7f517e2f6000 rw-p 000c4000 fc:00 15210920 /app/.heroku/python/lib/python2.7/site-packages/numpy/linalg/_umath_linalg.so 7f517e2f6000-7f517e2fa000 r-xp 00000000 fc:00 15210923 /app/.heroku/python/lib/python2.7/site-packages/numpy/linalg/lapack_lite.so 7f517e2fa000-7f517e4fa000 ---p 00004000 fc:00 15210923 /app/.heroku/python/lib/python2.7/site-packages/numpy/linalg/lapack_lite.so 7f517e4fa000-7f517e4fb000 rw-p 00004000 fc:00 15210923 /app/.heroku/python/lib/python2.7/site-packages/numpy/linalg/lapack_lite.so 7f517e4fb000-7f517e4fd000 rw-p 00019000 fc:00 15210923 /app/.heroku/python/lib/python2.7/site-packages/numpy/linalg/lapack_lite.so 7f517e4fd000-7f517e5fd000 rw-p 00000000 00:00 0 7f517e5fd000-7f51885fd000 rw-p 00000000 00:00 0 7f51885fd000-7f518863d000 rw-p 00000000 00:00 0 7f518863d000-7f518870c000 r-xp 00000000 fc:00 15210538 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/app/.heroku/python/lib/python2.7/lib-dynload/pyexpat.so 7f5191e93000-7f5191ed3000 rw-p 00000000 00:00 0 7f5191ed3000-7f5191ede000 r-xp 00000000 fc:00 14820997 /app/.heroku/python/lib/python2.7/lib-dynload/_elementtree.so 7f5191ede000-7f51920de000 ---p 0000b000 fc:00 14820997 /app/.heroku/python/lib/python2.7/lib-dynload/_elementtree.so 7f51920de000-7f51920df000 r--p 0000b000 fc:00 14820997 /app/.heroku/python/lib/python2.7/lib-dynload/_elementtree.so 7f51920df000-7f51920e0000 rw-p 0000c000 fc:00 14820997 /app/.heroku/python/lib/python2.7/lib-dynload/_elementtree.so 7f51920e0000-7f51928e0000 rw-p 00000000 00:00 0 7f51928e0000-7f51928e9000 r-xp 00000000 fc:00 15211498 /app/.heroku/python/lib/python2.7/site-packages/opbeat/utils/wrapt/_wrappers.so 7f51928e9000-7f5192ae8000 ---p 00009000 fc:00 15211498 /app/.heroku/python/lib/python2.7/site-packages/opbeat/utils/wrapt/_wrappers.so 7f5192ae8000-7f5192ae9000 r--p 00008000 fc:00 15211498 /app/.heroku/python/lib/python2.7/site-packages/opbeat/utils/wrapt/_wrappers.so 7f5192ae9000-7f5192aeb000 rw-p 00009000 fc:00 15211498 /app/.heroku/python/lib/python2.7/site-packages/opbeat/utils/wrapt/_wrappers.so 7f5192aeb000-7f5192beb000 rw-p 00000000 00:00 0 7f5192beb000-7f5192bfc000 r-xp 00000000 fc:00 14821010 /app/.heroku/python/lib/python2.7/lib-dynload/_sqlite3.so 7f5192bfc000-7f5192dfc000 ---p 00011000 fc:00 14821010 /app/.heroku/python/lib/python2.7/lib-dynload/_sqlite3.so 7f5192dfc000-7f5192dfd000 r--p 00011000 fc:00 14821010 /app/.heroku/python/lib/python2.7/lib-dynload/_sqlite3.so 7f5192dfd000-7f5192dff000 rw-p 00012000 fc:00 14821010 /app/.heroku/python/lib/python2.7/lib-dynload/_sqlite3.so 7f5192dff000-7f5192e80000 rw-p 00000000 00:00 0 7f5192e80000-7f5192e8f000 r-xp 00000000 07:00 137901 /lib/x86_64-linux-gnu/libbz2.so.1.0.4 7f5192e8f000-7f519308e000 ---p 0000f000 07:00 137901 /lib/x86_64-linux-gnu/libbz2.so.1.0.4 7f519308e000-7f519308f000 r--p 0000e000 07:00 137901 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7f51ab205000-7f51ab404000 ---p 00004000 fc:00 14821042 /app/.heroku/python/lib/python2.7/lib-dynload/time.so 7f51ab404000-7f51ab405000 r--p 00003000 fc:00 14821042 /app/.heroku/python/lib/python2.7/lib-dynload/time.so 7f51ab405000-7f51ab407000 rw-p 00004000 fc:00 14821042 /app/.heroku/python/lib/python2.7/lib-dynload/time.so 7f51ab407000-7f51ab40b000 r-xp 00000000 fc:00 14821004 /app/.heroku/python/lib/python2.7/lib-dynload/_locale.so 7f51ab40b000-7f51ab60a000 ---p 00004000 fc:00 14821004 /app/.heroku/python/lib/python2.7/lib-dynload/_locale.so 7f51ab60a000-7f51ab60b000 r--p 00003000 fc:00 14821004 /app/.heroku/python/lib/python2.7/lib-dynload/_locale.so 7f51ab60b000-7f51ab60c000 rw-p 00004000 fc:00 14821004 /app/.heroku/python/lib/python2.7/lib-dynload/_locale.so 7f51ab60c000-7f51ab7c7000 r-xp 00000000 07:00 137902 /lib/x86_64-linux-gnu/libc-2.19.so 7f51ab7c7000-7f51ab9c6000 ---p 001bb000 07:00 137902 /lib/x86_64-linux-gnu/libc-2.19.so 7f51ab9c6000-7f51ab9ca000 r--p 001ba000 07:00 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7f51abedd000-7f51ac0dc000 ---p 00003000 07:00 137911 /lib/x86_64-linux-gnu/libdl-2.19.so 7f51ac0dc000-7f51ac0dd000 r--p 00002000 07:00 137911 /lib/x86_64-linux-gnu/libdl-2.19.so 7f51ac0dd000-7f51ac0de000 rw-p 00003000 07:00 137911 /lib/x86_64-linux-gnu/libdl-2.19.so 7f51ac0de000-7f51ac0f7000 r-xp 00000000 07:00 137955 /lib/x86_64-linux-gnu/libpthread-2.19.so 7f51ac0f7000-7f51ac2f6000 ---p 00019000 07:00 137955 /lib/x86_64-linux-gnu/libpthread-2.19.so 7f51ac2f6000-7f51ac2f7000 r--p 00018000 07:00 137955 /lib/x86_64-linux-gnu/libpthread-2.19.so 7f51ac2f7000-7f51ac2f8000 rw-p 00019000 07:00 137955 /lib/x86_64-linux-gnu/libpthread-2.19.so 7f51ac2f8000-7f51ac2fc000 rw-p 00000000 00:00 0 7f51ac2fc000-7f51ac31f000 r-xp 00000000 07:00 137891 /lib/x86_64-linux-gnu/ld-2.19.so 7f51ac35c000-7f51ac41c000 rw-p 00000000 00:00 0 7f51ac41c000-7f51ac44d000 rw-p 00000000 00:00 0 7f51ac44d000-7f51ac511000 rw-p 00000000 00:00 0 7f51ac51a000-7f51ac51b000 rw-p 00000000 00:00 0 7f51ac51b000-7f51ac51c000 rwxp 00000000 00:00 0 7f51ac51c000-7f51ac51e000 rw-p 00000000 00:00 0 7f51ac51e000-7f51ac51f000 r--p 00022000 07:00 137891 /lib/x86_64-linux-gnu/ld-2.19.so 7f51ac51f000-7f51ac520000 rw-p 00023000 07:00 137891 /lib/x86_64-linux-gnu/ld-2.19.so 7f51ac520000-7f51ac521000 rw-p 00000000 00:00 0 7ffecac42000-7ffecac63000 rw-p 00000000 00:00 0 [stack] 7ffecad1c000-7ffecad1e000 r-xp 00000000 00:00 0 [vdso] ffffffffff600000-ffffffffff601000 r-xp 00000000 00:00 0 [vsyscall]
Change History (5)
comment:1 by , 9 years ago
| Description: | modified (diff) |
|---|
comment:2 by , 9 years ago
| Description: | modified (diff) |
|---|
comment:3 by , 9 years ago
comment:5 by , 9 years ago
| Resolution: | → needsinfo |
|---|---|
| Status: | new → closed |
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Can you provide a minimal project to reproduce the crash?